Retry with single core in geneformer #41
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
lazappi
added a commit
to HelloWorldLTY/task_batch_integration
that referenced
this pull request
Jan 27, 2025
* origin/main: (28 commits) Adjust pyliger dependencies (openproblems-bio#43) Minor run adjustments (openproblems-bio#44) Fix reference in task description (openproblems-bio#45) Remove grouping bottleneck (openproblems-bio#42) Retry with single core in geneformer (openproblems-bio#41) Adjustments based on benchmark run (openproblems-bio#39) Update compute environment (openproblems-bio#35) Replace "+" in batch names for liger (openproblems-bio#37) Update common submodule to commit 62268aa (openproblems-bio#38) Adjust features filter in scPRINT (openproblems-bio#36) minor tweaks to the cell cycle component (openproblems-bio#34) Update common submodule to commit a2e845 (openproblems-bio#33) Increase time resources (openproblems-bio#27) GPU adjustments (openproblems-bio#32) Add batch_hvg var column to solution (openproblems-bio#31) Add fine-tuned scGPT (openproblems-bio#17) Bump scIB to v1.1.7 (openproblems-bio#30) Pin scPRINT version (openproblems-bio#25) Increase UCE memory tag (openproblems-bio#24) Add exit codes helper file (openproblems-bio#26) ...
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Describe your changes
Add
geneformerscript missing from #39Checklist before requesting a review
I have performed a self-review of my code
Check the correct box. Does this PR contain:
Proposed changes are described in the CHANGELOG.md
CI Tests succeed and look good!